# Molecular Dynamics

The Molecular Dynamics plugin runs simple molecular dynamics simulations on single complexes within the workspace.

This plugin requires a working version of openmm. To install:

  • Install Anaconda3
  • conda install -c omnia openmm
  • pip install nanome-molecular-dynamics

To use the plugin, simply select the target complex you'd like to run a simulation on and press Start. If you add an additional complex to the workspace, pressing the Refresh button will update your Target complex list, allowing you to run a simulation on the new desired target.

Last Updated: 1/10/2020, 7:29:42 PM